Metabolite names used in the GSMN model of S. coelicolor

AbbreviationFull name
(n)POLYPn-polyphosphate
(n-1)POLYP(n-1)-polyphosphate
13PDG3-Phospho-D-glyceroyl phosphate
2A3KB2-Amino-3-ketobutyrate
2MBECOAtrans-2-Methylbut-2-enoyl-CoA
2MBUTCOA2-Methylbutanoyl-CoA
2MBUTLIPOS-2-Methylbutanoyldihydrolipoamide
2PCDPMDE2-Phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol
2PG2-Phospho-D-glycerate
3DDAH7P2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate
3MBECOA3-Methylbut-glutaconyl-CoA
3MBUTCOA3-Methylbutanoyl-CoA
3MBUTLIPOS-3-Methylbutanoyldihydrolipoamide
3PG3-Phospho-D-glycerate
3PSER3-Phosphoserine
3PSME5-O-(1-Carboxyvinyl)-3-phosphoshikimate
4HPP3-(4-Hydroxyphenyl)pyruvate
4PPNCYS(R)-4'-Phosphopantothenoyl-L-cysteine
4PPNTEPantetheine 4'-phosphate
4PPNTOD-4'-Phosphopantothenate
5MTA5'-Methylthioadenosine
A6RP5-Amino-6-ribitylamino-2,4 (1H, 3H)-pyrimidinedione
A6RP5P5-Amino-6-(5'-phosphoribosylamino)uracil
A6RP5P25-Amino-6-(5'-phosphoribitylamino)uracil
AACCOAAcetoacetyl-CoA
ABUT2-Aceto-2-hydroxybutanoate
ACAcetate
ACACPAcyl-[acyl-carrier protein]
ACALAcetaldehyde
ACCOAAcetyl-CoA
ACETYLPAcetyl-P
ACLAC2-Acetolactate
ACPAcyl-carrier protein
ACRCOAAcryloyl-CoA
ACTActinorhodin
ACTACAcetoacetate
ADAdenine
ADCHOR4-amino-4-deoxychorismate
ADHAPAcyldihydroxyacetone phosphate
ADLIPO6-S-Acetyldihydrolipoamide
ADNAdenosine
ADPADP
AGL3PAcyl-sn-glycerol 3-phosphate
AHHMD2-Amino-7,8-dihydro-4-hydroxy-6-(diphosphooxymethyl)pteridine
AHHMP2-Amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine
AHTD2-Amino-4-hydroxy-6-(erythro-1,2,3-trihydroxypropyl)-dihydropteridine triphosphate
AICAR1-(5'-Phosphoribosyl)-5-amino-4-imidazolecarboxamide
AIRAminoimidazole ribotide
AKG2-Oxoglutarate
AKP2-Dehydropantoate
ALAL-Alanine
ALAALAD-alanyl-D-alanine
ALALACD-alanyl-D-lactate
AMINOACETONEAminoacetone
AMINOVAL5-aminovalerate
AMPAMP
ANAnthranilate
APSAdenylylsulfate
ARABITOLL-Arabitol
ARGL-Arginine
ARGSUCCN-(L-Arginino)succinate
ASERO-Acetyl-L-serine
ASNL-Asparagine
ASPL-Aspartate
ASPSAL-Aspartate 4-semialdehyde
ASUCN6-(1,2-Dicarboxyethyl)-AMP
ATNAllantoin
ATPATP
ATTAllantoate
bALAbeta-Alanine
BASP4-Phospho-L-aspartate
bDG6Pbeta-D-Glucose 6-phosphate
bDGLCbeta-D-Glucose
BIOMASSBiomass
C040COAButanoyl-CoA
C060ACPHexanoyl-[acyl-carrier protein]
C060COAHexanoyl-CoA
C080COAOctanoyl-CoA
C100ACPDecanoyl-[acyl-carrier protein]
C120ACPDodecanoyl-[acyl-carrier protein]
C140ACPMyristoyl-[acyl-carrier protein]
C141ACPTetradecanoyl-[acyl-carrier protein]
C150ACPPentadecanoyl-[acyl-carrier protein]
C160ACPHexadecanoyl-[acyl-carrier protein]
C161ACPPalmitoyl-[acyl-carrier protein]
C16H14O6_1Intermediate in actinorhodin biosynthesis
C16H14O6_2Intermediate in actinorhodin biosynthesis
C16H16O5Intermediate in actinorhodin biosynthesis
C16H16O7Intermediate in actinorhodin biosynthesis
C16H17O8Intermediate in actinorhodin biosynthesis
C16H20O9Intermediate in actinorhodin biosynthesis
C170ACPHeptadecanoyl-[acyl-carrier protein]
C180ACPStearoyl-[acyl-carrier protein]
C181ACPOleoyl-[acyl-carrier protein]
C182ACPLinolenoyl-[acyl-carrier protein]
C32H26O12Intermediate in actinorhodin biosynthesis
CAASPN-Carbamoyl-L-aspartate
CADACadaverine
CAGLUN-Carbamyl-L-glutamate
CAIR1-(5-Phospho-D-ribosyl)-5-amino-4-imidazolecarboxylate
cAMP3',5'-Cyclic AMP
CAPCarbamoyl phosphate
CARBOHYDRATECarbohydrates (biomass component)
CBHCAP3-Isopropylmalate
CDACalcium-dependent antibiotic
CDA_int1trans-hexenoyl-CoA (intermediate in CDA biosynthesis)
CDA_int2L-4-hydroxymandelic acid (intermediate in CDA biosynthesis)
CDA_int34-hydroxyphenylglyoxylate (intermediate in CDA biosynthesis)
CDPCDP
CDPDGCDP-diacylglycerol
CDPGLCDP-glycerol
CDPMDE4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol
CELBCellobiose
cGMP3',5'-Cyclic GMP
CHORChorismate
CITCitrate
CITRL-Citrulline
CLCardiolipin (biomass component)
CMPCMP
CO2CO2
COACoA
CPAD5P1-(2-Carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate
CROTONOYLCOACrotonoyl-CoA
CTPCTP
CYSL-Cysteine
CYTDCytidine
CYTSCytosine
D6PGC6-Phospho-D-gluconate
D6PGLD-Glucono-1,5-lactone 6-phosphate
D6RP5P2,5-Diamino-6-hydroxy-4-(5'-phosphoribosylamino)-pyrimidine
D8RL6,7-Dimethyl-8-(1-D-ribityl)lumazine
DADeoxyadenosine
DADPdADP
DALAD-alanine
DAPIML,L-2,6-Diaminopimelate
DARABINOSED-Arabinose
DARABITOLD-Arabitol
DATPdATP
DB4PL-3,4-Dihydroxy-2-butanone 4-phosphate
DCDeoxycytidine
DCDPdCDP
DCMPdCMP
DCTPdCTP
DGDeoxyguanosine
DGDPdGDP
DGLUTAMATED-Glutamate
DGLYCERATED-glycerate
DGMPdGMP
DGTPdGTP
DHAPGlycerone phosphate
DHFDihydrofolate
DHLIPOYLPROTEINDihydrolipoylprotein
DHMVA(R)-2,3-dihydroxy-3-methylbutanoate
DHN1,4-dihydroxy-2-naphthoate
DHP2-Amino-4-hydroxy-6-(D-erythro-1,2,3-trihydroxypropyl)-7,8-dihydropteridine
DHPTDihydropteroate
DHSK3-Dehydroshikimate
DIHYDRODIPICOLINATE2,3-Dihydrodipicolinate
DIHYDROXYMETHYLPENTANOATE(R)-2,3-dihydroxy-3-methylpentanoate
DIMGPD-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate
DINDeoxyinosine
DLIPODihydrolipoamide
DLYXOSED-Lyxose
DMK2-Demethylmenaquinone
DMPPDimethylallyl diphosphate
DNADNA (biomass component)
DOROA(S)-Dihydroorotate
DPCOADephospho-CoA
DQT3-Dehydroquinate
DR1PDeoxy-ribose 1-phosphate
DR5P2-Deoxy-D-ribose 5-phosphate
DRIBDeoxyribose
DSERD-serine
DTThymidine
DTDPdTDP
DTMPdTMP
DTTPdTTP
DUDeoxyuridine
DUDPdUDP
DUMPdUMP
DUTPdUTP
DX5P1-Deoxy-D-xylulose 5-phosphate
DXYLULOSED-Xylulose
E4PD-Erythrose 4-phosphate
EPMEpimelibiose
EPOXYtrans-2,3-epoxyhexanoyl-CoA
ETHEthanol
F1PD-Fructose 1-phosphate
F6Pbeta-D-Fructose 6-phosphate
FADFAD
FADH2FADH2
FALDFormaldehyde
FANFormyl-anthranilate
FDPbeta-D-Fructose 1,6-bisphosphate
FERIFerricytochrome b1
FEROFerrocytochrome b1
FGAM2-(Formamido)-N1-(5'-phosphoribosyl)acetamidine
FGAR5'-Phosphoribosyl-N-formylglycinamide
FKYNL-Formylkynurenine
FMNFMN
FORFormate
FORGLUN-formimino-L-glutamate
FORMAMIDEFormamide
FPPtrans,trans-Farnesyl diphosphate
FRUD-Fructose
FTHF10-Formyltetrahydrofolate
FUACAC4-Fumarylacetoacetate
FUMFumarate
G15LD-Glucono-1,5-lactone
G1PD-Glucose 1-phosphate
G3PD-Glyceraldehyde 3-phosphate
G6Palpha-D-Glucose 6-phosphate
GA1PD-Glucosamine 1-phosphate
GA6PD-Glucosamine 6-phosphate
GABA4-Aminobutanoate
GAL1PD-Galactose 1-phosphate
GALACTINOLGalactinol
GAR5'-Phosphoribosylglycinamide
GDPGDP
GDPMANGDPmannose
GGLGalactosylglycerol
GGPPGeranylgeranyl diphosphate
GLGlycerol
GL3Psn-Glycerol-3-phosphate
GLACD-Galactose
GLALGlycolaldehyde
GLAMGlucosamine
GLCalpha-D-Glucose
GLNL-Glutamine
GLUL-Glutamate
GLUCD-Gluconate
GLUGSALL-Glutamate 5-semialdehyde
GLUPalpha-D-Glutamyl phosphate
GLUTGlutarate
GLUTCOAGlutaryl-CoA
GLUTSEMIGlutarate semialdehyde
GLXGlyoxylate
GLYGlycine
GLYCOLATEGlycolate
GLYNGlycerone
GMPGMP
GNGuanine
GPPGeranyl diphosphate
GSNGuanosine
GTPGTP
HH+ (external)
H2O2H2O2
H2SHydrogen sulfide
H2SO3Sulfite
H5P3O10Triphosphate
HCYSHomocysteine
HEPPPall-trans-Heptaprenyl diphosphate
HIBUT(S)-3-Hydroxyisobutyryl
HIBUTCOA(S)-3-Hydroxyisobutyryl-CoA
HISL-Histidine
HISOLL-Histidinol
HISOLPL-Histidinol phosphate
HMB4PP1-Hydroxy-2-methyl-2-butenyl 4-diphosphate
HMBUTCOA(S)-3-Hydroxy-2-methylbutyryl-CoA
HMGLUTCOA(S)-3-Hydroxy-3-methylglutaryl-CoA
HMP2-(Hydroxymethyl)phenol
HOMOGENHomogentisate
HPCOA3-hydroxypropionyl-CoA
HPPPall-trans-Hexaprenyl diphosphate
HSERL-Homoserine
HYDANTPRHydantoin-5-propionate
HYDROXYAKG4-Hydroxy-2-oxoglutarate
HYDROXYASN3-hydroxyasparagine
HYDROXYPYRUVATEHydroxypyruvate
HYXNHypoxanthine
IBUTCOAIsobutyryl-CoA
IBUTLIPOS-Isobutanoyldihydrolipoamide
ICHORIsochorismate
ICITIsocitrate
IDPIDP
IGPIndoleglycerol phosphate
ILEL-Isoleucine
IMACP3-(Imidazol-4-yl)-2-oxopropyl phosphate
IMPIMP
INSInosine
IPPIsopentenyl diphosphate
IPPMAL2-Isopropylmalate
ISUCCalpha-Iminosuccinate
ITPITP
KDG2-Dehydro-3-deoxy-D-gluconate
KDPG2-Dehydro-3-deoxy-D-gluconate-6-phosphate
KYNL-Kynurenine
LAC(R)-Lactate, D-Lactate
LACTAL(S)-Lactaldehyde, L-Lactaldehyde
LACTOSELactose
LARABINOSEL-Arabinose
LEUL-Leucine
LIPOLipoamide
LIPOYLPROTEINLipoylprotein
LLAC(S)-Lactate, L-Lactate
LLCTL-Cystathionine
LLYXOSEL-Lyxose
LRIBULOSEL-Ribulose
LRIBULOSE5PL-Ribulose-5-phosphate
LXYLULOSEL-Xylulose
LXYLULOSE1PL-Xylulose-1-phosphate
LXYLULOSE5PL-Xylulose-5-phosphate
LYSL-Lysine
MAACCOA2-Methylacetoacetyl-CoA
MACAC4-maleylacetoacetate
MACRCOAMethacrylyl-CoA
MALMalate
MALACPMalonyl-[acyl-carrier protein]
MALCOAMalonyl-CoA
MALONATESMalonate semialdehyde
MANalpha-D-Mannose
MAN1Palpha-D-Mannose 1-phosphate
MAN6PD-Mannose 6-phosphate
MDAPIMmeso-2,6-Diaminopimelate
MDE4P2-C-Methyl-D-erythritol 4-phosphate
MDECPP2-C-Methyl-D-erythritol 2,4-cyclodiphosphate
MELIMelibiose
MELTMelibiitol
METL-Methionine
METHANOLMethanol
METHF5,10-Methenyltetrahydrofolate
METHYLMALONATEMethylmalonate
METHYLMALONATES2-methyl-3-oxopropanoate (methylmalonate semialdehyde)
METTHF5,10-Methylenetetrahydrofolate
MGLUTCOA3-Methyl-glutaconyl-CoA
MImyo-Inositol
MKmenaquinone
MKH2menaquinol
MLTMaltose
MNTD-Mannitol
MNT1PD-Mannitol 1-phosphate
MOP4-Methyl-2-oxopentanoate
MTHF5-Methyltetrahydrofolate
MTHPTGLU5-Methyltetrahydropteroyltri-L-glutamate
NaSodium
NAADDeamido-NAD+
NACNicotinate
NACDNicotinate D-ribonucleoside
NACNNicotinate D-ribonucleotide
NADNAD+
NADHNADH
NADPNADP+
NADPHNADPH
NAGA1PN-Acetyl-D-glucosamine 1-phosphate
NAGLUN-Acetyl-L-glutamate
NAGLUPN-Acetyl-L-glutamate 5-phosphate
NAGLUSN-Acetyl-L-glutamate 5-semialdehyde
NAMNicotinamide
NAMDN-Ribosylnicotinamide
NAMNNicotinamide D-ribonucleotide
NAORNN2-Acetyl-L-ornithine
NH3NH3
NO2nitrite
NO3nitrate
NPPall-trans-Nonaprenyl diphosphate
NPRANN-(5-Phospho-D-ribosyl)anthranilate
NRP13-methyl-glutamate (non-ribosomal protein, CDA component)
NRP2D-3-phosphohydroxyasparagine (non-ribosomal protein, CDA component)
NRP3D-4-hydroxyphenylglycine (non-ribosomal protein, CDA component)
O2Oxygen
OAOxaloacetate
OAHSERO-Acetyl-L-homoserine
OBUT2-Oxobutanoate
ODHIMP3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate
OICAP3-Carboxy-4-methyl-2-oxopentanoate
OIVAL(R)-2-Oxoisovalerate
OMPOrotidine 5'-phosphate
OMVAL3-Methyl-2-oxobutanoate
OPCOA3-oxopropionyl-CoA
OPPall-trans-Octaprenyl diphosphate
ORNL-Ornithine
OROAOrotate
OSBO-succinylbenzoate
OSBCOAO-succinylbenzoate-CoA
OSLHSERO-Succinyl-L-homoserine
OTHIOOxidized thioredoxin
OXOMETHYLPENTANOATE3-Methyl-2-oxopentanoate
P5C(S)-1-Pyrroline-5-carboxylate
PAPhosphatidate
PABA4-Aminobenzoate
PACPhenylacetic acid
PANT(R)-Pantoate
PAPAdenosine 3',5'-bisphosphate
PAPS3'-Phosphoadenylylsulfate
PEPhosphatidylethanolamine
PEPPhosphoenolpyruvate
PEPTIDOGLYCANPeptidoglycan (biomass component)
PGPhosphatidylglycerol
PGPPhosphatidylglycerophosphate
PHACPhenyl-acetaldehyde
PHEL-Phenylalanine
PHENPrephenate
PHOSPHOLIPIDPhospholipids (biomass component)
PHP3-Phosphonooxypyruvate
PHPYRPhenylpyruvate
PHSERO-Phospho-L-homoserine
PIOrthophosphate
PIPERPiperideine
PNTO(R)-Pantothenate
POLYGP12-residues chain (teichoic acid component)
ppGppguanosine 5 -diphosphate 3 -diphosphate
PPIPyrophosphate
PPPPall-trans-Pentaprenyl diphosphate
PRAM5-Phosphoribosylamine
PRBAMPN1-(5-Phospho-D-ribosyl)-AMP
PRBATPN1-(5-Phospho-D-ribosyl)-ATP
PRFICA1-(5'-Phosphoribosyl)-5-formamido-4-imidazolecarboxamide
PRFP5-(5-Phospho-D-ribosylaminoformimino)-1-(5-phosphoribosyl)-imidazole-4-carboxamide
PRLPN-(5'-Phospho-D-1'-ribulosylformimino)-5-amino-1-(5"-phospho-D-ribosyl)-4-imidazolecarboxamide
PROL-Proline
PRO-AMPL-Prolyl-AMP (intermediate in undecylprodigiosin synthesis)
PROPANOATEPropanoate
PRO-PCPPCP-bound L-Prolyne
PROPIONYLACPPropionyl-[acyl-carrier protein]
PROPIONYLCOAPropionyl-CoA
PROPIONYLPPropionyl-phosphate
PROTEINProteins (biomass component)
PRPP5-Phospho-alpha-D-ribose 1-diphosphate
PSPhosphatidylserine
PTRSCPutrescine
PURI5PPseudouridine 5'-phosphate
PYRPyruvate
PYRA-PCPPCP-bound pyrrole (makes ring "a" in undecylprodigiosin)
QAQuinolinate
R1PD-Ribose 1-phosphate
R5PD-Ribose 5-phosphate
RAFRaffinose
RHAMNRhamnulose
RHAMN1PRhamnulose-1-phosphate
RHYDROXYBUTANOATE(R)-3-hydroxybutanoate
RHYDROXYBUTANOYL(R)-3-hydroxybutanoyl-CoA
RIBD-Ribose
RIBFLAVRiboflavin
RL5PD-Ribulose 5-phosphate
RMMALONYLCOA(R)-Methylmalonyl-CoA
RMND-Rhamnose
RNARNA (biomass component)
RTHIOReduced thioredoxin
S7PSedoheptulose 7-phosphate
SAHS-Adenosyl-L-homocysteine
SAICAR1-(5'-Phosphoribosyl)-5-amino-4-(N-succinocarboxamide)-imidazole
SAL6PSalicin-6-phosphate
SALICINSalicin
SAMS-Adenosyl-L-methionine
SAOPIMN-Succinyl-2-amino-6-oxopimelate
SAPS-Aminomethyldihydrolipoylprotein
SDAPIMN-Succinyl-L-2,6-diaminopimelate
SDLIPOS-Succinyldihydrolipoamide
SERL-Serine
SHCHC2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
SHYDROXYBUTANOYL(S)-3-hydroxybutanoyl-CoA
SLFSulfate
SMALL MOLECULEsSmall molecules pool (biomass component)
SMEShikimate
SME3PShikimate 3-phosphate
SMMALONYLCOA(S)-Methylmalonyl-CoA
SOTD-Sorbitol
SPRMDSpermidine
STACHYOSEStachyose
SUCSucrose
SUCCSuccinate
SUCCOASuccinyl-CoA
SUCCSALSuccinate semialdehyde
T3D-Glyceraldehyde
TAGTriacylglycerols (biomass component)
TARTRATE(R,R)-Tartaric acid
TARTRONATETartronate samialdehyde
TEICHTeichoic acid (biomass component)
TETRAHYDRODIPICOLINATE2,3,4,5-Tetrahydrodipicolinate
THFTetrahydrofolate
THFGTetrahydrofolyl-[Glu](n)
THPTGLUTetrahydropteroyltri-L-glutamate
THRL-Threonine
THYThymine
TREalpha,alpha-Trehalose
TRE6Palpha,alpha'-Trehalose 6-phosphate
TRPL-Tryptophan
TYRL-Tyrosine
UDPUDP
UDPDGLUCUDP-D-glucuronate
UDPGUDPglucose
UDPGALUDP-D-galactose
UDPNACVGUDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine
UDPNAGUDP-N-acetyl-D-glucosamine
UDPNAMUDP-N-acetylmuramate
UGC(S)-Ureidoglycolate
UMPUMP
URAUracil
URATEUrate
UREAUrea
URIUridine
UROCANATEUrocanate
UTPUTP
VALL-Valine
X5PD-Xylulose-5-phosphate
XANXanthine
XMPXanthosine 5'-phosphate
XTSINEXanthosine
XYLD-Xylose
XYLITOLXylitol